The actual conversion process to convert from the TB42 to the TD42 is actually quite simple.
According to the manual, the TB42 and TD42 Y60's use the same gear and diff ratios. I replaced the gearbox on mine because, on a trip to Botswana in 2012, the gearbox got some water in, and I only discovered this about 25k km later. This resulted in the loss of synchromesh on 5th gear and a bearing rumble, and lately it has started slipping out of 3rd gear under compression when the gearbox is hot.
The bell-housing for the TD42 is slightly different to that of the TB42, in the area where the starter bolts on. The casting is the same, but the bolting pattern is different and the "nose" of the starter is larger, thus some new holes need to be drilled and tapped and some relieving needs to be done.
Other than that, a normally-aspirated TD42 would drop straight in mechanically. The engine mounts are interchangeable and in exactly the same place, the clutches appear to be the same. We did have to modify the bracket on the fuel pump that the accelerator cable attaches to, but the TB42's cable is just long enough to fit.

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The air conditioner is mounted in the same place, and it is not necessary to replace or modify the piping. However, the power steering pump and alternator need to reverse places.
Fortunately we had the alternator, power steering pump and power steering piping from the donor car, which all fits on the same chassis. So we just un-bolted the power steering piping from the steering box and bolted in the replacement. The vacuum piping is of course different and had to be replaced, as did the alternator wiring.
As for the rest of the engine wiring, this seemed quite simple (although an expert always makes things seem simple, and I left that part to Ant). The oil pressure sender is in the same place, and they are the same unit too, so it just plugged in. We cut the control wire from the TB's starter and fitted it to the "new" starter. The water temp sender is also the same, and we just needed to extend the wire a bit. The wire powering the solenoid on the carb was adapted to power the solenoid on the fuel pump, as they do the same job in the same way. Ant just needed to replace the plugs. The rev counter needed a special box of tricks to make it work, but I don't really know how much effort it was to install this.
Also, we had to install a glow plug circuit. We did this the easy way: a non-latching switch was mounted in the dash (where the choke cable used to be). This powers Cole Hersee solenoid mounted on the firewall. Both circuits are of course appropriately fused.
Oh, and if I had kept the engine normally aspirated, the exhaust manifolds are interchangeable...
The radiator is also different, with the piping reversed. However, my radiator was shot anyway, and needed to be replaced. The cowl and fan are the same though. We fitted a custom Aluminium radiator from Universal Coolers. The workmanship is beautiful, and time will tell how well it works. The water piping is generally much simpler. On the TB, there are water piping connections for the "oil cooler", the intake manifold and the heater. The TD only has the heater, and the piping is much more accessible.
Mag ons ons kenniskry met lekkerkry aanhoukry.